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The GeneQuiz system provides highly automated analysis of biological sequences. Full use of GeneQuiz requires that you install certain other software at your site.

You can read a brief document about GeneQuiz explaining what it does, how it works and for what it has been used. For more details you may want to check the list of publications related to GeneQuiz.

Announced in
Science NetWatch 291(5501)
NetWatch

If you use our results in your work please cite:
Andrade et al. (1999). Bioinformatics 15:391-412 or Iliopoulos et al. (2000)

Genomes that were added to GeneQuiz since its release in mid December 2000:


Genome analysis with GeneQuiz

The GeneQuiz analysis server is open to the public. Analyse your protein sequence with GQserve.


Current status of the analysis of complete genomes:

[genomes marked with (#) were not included in Iliopoulos et al. (2000)]

SPECIES NAME STRAIN  T WHERE/WHEN*
 Aeropyrum pernix  K1  A
  • [EBI:April 00]
 Agrobacterium tumefaciens (#)  C58  B
  • [EBI:Sept 01]
 Aquifex aeolicus  VF5  B
  • [EBI:June 00]
  • [EBI:Dec 99]
 Archaeoglobus fulgidus  DSM4304  A
  • [EBI:May 00]
  • [EBI:Dec 97]
 Bacillus halodurans (#)  C-125  B
  • [EBI:December 00]
 Bacillus subtilis  168  B
  • [EBI:May 00]
  • [EBI:Jan 98]
 Borrelia burgdorferi  B31  B
  • [EBI:May 00]
  • [EBI:Jan 98]
 Buchnera sp. (#)  APS  B
  • [EBI:November 00]
 Caenorhabditis elegans  NA  E
  • Coming Soon
 Campylobacter jejuni  NCTC 11168  B
  • [EBI:April 00]
 Caulobacter crescentus (#)  CB15  B
  • [EBI:August 01]
 Chlamydia pneumoniae  AR39  B
  • [EBI:May 00]
 Chlamydia pneumoniae  CWL029  B
  • [EBI:June 00]
  • [EBI:Sept 99]
 Chlamydia pneumoniae (#)  J138  B
  • [EBI:December 00]
 Chlamydia trachomatis  MoPn  B
  • [EBI:April 00]
 Chlamydia trachomatis  serovar D  B
  • [EBI:June 00]
  • [EBI:Jan 99]
 Clostridium acetobutylicum (#)  ATCC824  B
  • [EBI:August 01]
 Deinococcus radiodurans  R1  B
  • [EBI:April 00]
 Drosophila melanogaster  NA  E
  • [EBI:June 00]
 Escherichia coli  K12  B
  • [EBI:May 00]
 Escherichia coli O157:H7 (#)  RIMD0509952  B
  • [EBI:June 01]
 Escherichia coli O157 (#)  EDL933 (partial)  B
  • [EBI:Sept 01]
 Halobacterium sp. (#)  NRC-1  A
  • [EBI:December 00]
 Haemophilus influenzae  KW20  B
  • [EBI:Oct 01]
  • [EBI:May 00]
  • [EBI:Feb 98]
  • [EBI:Jun 97]
  • [EMBL:96]
 Helicobacter pylori  J99  B
  • [EBI:June 00]
  • [EBI:Sept 99]
 Helicobacter pylori  26695  B
  • [EBI:May 00]
 Lactococcus lactis (#)  IL1403  B
  • [EBI:June 01]
 Mesorhizobium loti (#)  MAFF303099  B
  • [EBI:June 01]
 Methanobacterium thermoautotrophicum  delta H  A
  • [EBI:May 00]
  • [EBI:Nov 97]
 Methanococcus jannaschii  DSM2661  A
  • [EBI:May 00]
  • [EBI:Oct 96]
 Mycobacterium leprae (#)  NA  B
  • [EBI:April 01]
 Mycobacterium tuberculosis  H37Rv  B
  • [EBI:April 00]
 Mycobacterium tuberculosis (#)  CDC1551 (partial)  B
  • [EBI:Sept 01]
 Mycoplasma genitalium  G-37  B
  • [EBI:May 00]
  • [EBI:Jun 97]
  • [EMBL:96]
 Mycoplasma pneumoniae  M129  B
  • [EBI:May 00]
  • [EBI:Dec 96]
 Mycoplasma pulmonis (#)  UAB CTIP  B
  • [EBI:June 01]
 Neisseria meningitidis  MC58  B
  • [EBI:May 00]
 Neisseria meningitidis  Z2491  B
  • [EBI:May 00]
 Pasteurella multocida (#)  Pm70  B
  • [EBI:May 01]
 Pseudomonas aeruginosa (#)  PAO1  B
  • [EBI:December 00]
 Pyrococcus abyssi  GE5  A
  • [EBI:April 00]
 Pyrococcus horikoshii  OT3  A
  • [EBI:April 00]
 Rickettsia conorii (#)  Malish 7  B
  • [EBI:Sept 01]
 Rickettsia prowazekii  Madrid E  B
  • [EBI:June 00]
  • [EBI:July 99]
 Saccharomyces cerevisiae  S288C  E
  • [EBI:June 00]
  • [EBI:Oct 97]
  • [EBI:Jan 97]
  • [EBI:Jun 96]
 Sinorhizobium meliloti (#)  1021  B
  • [EBI:August 01]
 Staphylococcus aureus VRSA (#)  Mu50  B
  • [EBI:August 01]
 Staphylococcus aureus (#)  N315 (partial)  B
  • [EBI:Sept 01]
 Streptococcus pneumoniae (type 4) (#)  ATCC BAA-334  B
  • [EBI:August 01]
 Streptococcus pneumoniae (#)  R6 (partial)  B
  • [EBI:Sept 01]
 Streptococcus pyogenes M1 (#)  SF370  B
  • [EBI:August 01]
 Sulfolobus solfataricus (#)  P2  A
  • [EBI:July 01]
 Sulfolobus tokodaii (#)  JCM10545  A
  • [EBI:Sept 01]
 Synechocystis sp.  PCC6803  B
  • [EBI:June 00]
  • [EBI:Sep 97]
  • [EBI:Nov 96]
 Thermoplasma acidophilum (#)  DSM 1728  A
  • [EBI:November 00]
 Thermoplasma volcanium (#)  GSS1  A
  • [EBI:July 01]
 Thermotoga maritima  MSB8  B
  • [EBI:March 00]
 Treponema pallidum  Nichols  B
  • [EBI:June 00]
  • [EBI:June 99]
 Ureaplasma urealyticum  serovar 3  B
  • [EBI:April 00]
 Vibrio cholerae (#)  El Tor N16961  B
  • [EBI:November 00]
 Xylella fastidiosa (#)  clone 9a5c  B
  • [EBI:December 00]
 Yersinia pestis (#)  CO92  B
  • [EBI:October 01]

(*actual date of the run)



And some bits and pieces...

SPECIES NAME Chromosome STRAIN  T WHERE/WHEN
 Arabidopsis thaliana  II  NA  E
  • Coming Soon
 Arabidopsis thaliana  IV  NA  E
  • Coming Soon
 Homo sapiens  XXII  NA  E
  • Coming Soon
 Leishmania major  I  Friedlin  E
  • Coming Soon
 Plasmodium falciparum  II  3D7  E
  • [EBI:June 00]
  • [EBI:Oct 99]
 Plasmodium falciparum  III  3D7  E
  • [EBI:January 01]

Comparative analysis of genomes

SPECIES NAME STRAINS  T WHERE/WHEN
 Helicobacter pylori  J99 vs 26695  B
  • Queued
  • Queued
 Escherichia coli O157 (#)  EDL933 vs RIMD0509952  B
  • [EBI:Sept 01]
 Staphylococcus aureus (#)  N315 vs Mu50  B
  • [EBI:Sept 01]
 Mycobacterium tuberculosis (#)  CDC1551 vs H37Rv  B
  • [EBI:Sept 01]
 Streptococcus pneumoniae (#)  R6 vs TIGR4  B
  • [EBI:Sept 01]
 More to follow ....    
     

Column T indicates: A = Archaea; B = Bacteria; E = Eukarya.
NA in column STRAIN indicates 'Not Applicable'.

Acknowledgements

GeneQuiz is supported by the EMBL and the European Union (TMR programme).

[Computational Genomics Group@EMBL-EBI] [Sander group [defunct]@EMBL-EBI] [EMBL-EBI] If you have comments, please .
Last update Oct 25 2001