Genome Region Map

Aquifex aeolicus
(346205 - 366205)
Borrelia burgdorferi
(319160 - 299160)
[Reverse]
Bacillus halodurans
(2693106 - 2673106)
[Reverse]
Bacillus subtilis
(1586531 - 1606531)
Buchnera sp.
(244474 - 224474)
[Reverse]
Campylobacter jejuni
(643224 - 663224)
Deinococcus radiodurans Chromosome I
(635500 - 655500)
Escherichia coli
(94613 - 114613)
Haemophilus influenzae
(1201299 - 1221299)
Helicobacter pylori
(1031367 - 1051367)
Lactococcus lactis
(1949643 - 1929643)
[Reverse]
Neisseria meningitidis
(426429 - 446429)
Pseudomonas aeruginosa
(4951161 - 4931161)
[Reverse]
Pasteurella multocida
(163053 - 183053)
Rickettsia prowazekii
(298686 - 318686)
Thermotoga maritima
(850750 - 870750)
Treponema pallidum
(404083 - 424083)
Vibrio cholerae Chromosome I
(2576905 - 2556905)
[Reverse]
Xylella fastidiosa
(743044 - 763044)
Change Scale Display ORF Name


Homology Parameters Value
Target species syn,mge,mpn,hpy,eco,hin,mth,mja,sce,afu,bsu,bbu
Maximum BLAST p-value 0.001
Minimum DP Score(PAM250) 80
Minimum percent identity 0
Maximum PAM distance 250
Minimum overlapping region 30
Pseudo global PAM yes
Maximum ratio of the next/top highest scores 90
Ambiguous orthologues should be connected
Clustering method mean
Clustering option phylocheck