MBGD Homologous gene cluster table

Keyword: ftsa [GeneName]

Cluster coloring is according to the function categories
A Multiple sequence alignment (ClustalW MAP)
M Multiple map comparison
H Find homologous clusters
Analyze the checked clusters
aae syn mle mtu bha bsu mge mpn uur lla cpn ctr rpr nme cje hpy buc eco xfa hin pmu pae vch bbu tpa tma dra ape afu hal mth mja pab pho tvo tac sce
O141 A M H
phaE
B1398
XF1916
VC0924
DRA0256
ftsA-2
ftsA-3
ftsA-1
MTH1855
MTH161
MTH1528
O747 A M H
ftsA
ftsA
ftsA
ftsA
ftsA
NMB0426
ftsA
HP0978
ftsA
ftsA
XF0801
ftsA
ftsA
ftsA
VC2398
ftsA
ftsA
TM0835
DR0630
Analyze the checked clusters

Display options:

Parameter Value
Color genes off function category PROSITE category
Display cluster members as ORF IDs gene names counts of members
Maximum outputs / page

Current clustering parameters:

Change parameters and retry
Homology Parameters Value
Target species aae,syn,mle,mtu,bha,bsu,mge,mpn,uur,lla,cpn,ctr,rpr,nme,cje,hpy,buc,eco,xfa,hin,pmu,pae,vch,bbu,tpa,tma,dra,ape,afu,hal,mth,mja,pab,pho,tvo,tac,sce
Maximum BLAST p-value 0.001
Minimum DP Score(PAM250) 80
Minimum percent identity 0
Maximum PAM distance 250
Minimum overlapping region 30
Pseudo global PAM yes
Maximum ratio of the next/top highest scores 90
Ambiguous orthologues should be connected
Clustering method mean
Clustering option phylocheck