MUMmer: The Whole Genome Alignment Tool

MUMmer is a system for aligning whole genome sequences. Using an efficient data structure called a suffix tree, the system is able rapidly to align sequences containing millions of nucleotides. It is fully described in: A.L. Delcher, S. Kasif, R.D. Fleischmann, J. Peterson, O. White, and S.L. Salzberg. Alignment of whole genomes. Nucleic Acids Research, 27:11 (1999), 2369-2376.
The MUMmer software package is freely available here.
  

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Shift Helicobacter pylori 26695 window toward the 3' end by 0 bases Shift Helicobacter pylori J99 window toward the 5' end by 0 bases Shift Helicobacter pylori J99 window toward the 5' end by 0 bases Shift Helicobacter pylori 26695 window toward the 5' end by 0 bases Shift Helicobacter pylori J99 window toward the 5' end by 0 bases Shift Helicobacter pylori 26695 window toward the 5' end by 0 bases Shift Helicobacter pylori 26695 window toward the 5' end by 0 bases Shift Helicobacter pylori J99 window toward the 3' end by 0 bases Shift Helicobacter pylori J99 window toward the 3' end by 0 bases Shift Helicobacter pylori 26695 window toward the 3' end by 0 bases Shift Helicobacter pylori J99 window toward the 3' end by 0 bases
Helicobacter pylori J99 vs. Helicobacter pylori 26695
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Genome coordinates
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Genome Navigation: Click to navigatePan Genomes
This figure displays a plot of maximally unique matching subsequences (MUMs) between genomes as identified by the MUMmer program. The minimum alignment length shown here is 100bp. Alignments with the same orientation are shown in red and alignments with opposite orientations are shown in green. Genes are shown along the axis for each genome and are colored by role.
Select a magnification level and click on the preview image above to zoom in/out on the display.
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